Yaha Installation On A Debian, Ubuntu And Kali

yaha

find split-read mappings on single-end queries

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: https://github.com/GregoryFaust/yaha

Section: science

Install yaha

Debian apt-get install yaha Click to copy
Ubuntu apt-get install yaha Click to copy
Kali Linux apt-get install yaha Click to copy

yaha

find split-read mappings on single-end queries

yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation: * The default u201cOptimal Query Coverageu201d (-OQC) mode reports the best set of alignments that cover the length of each query. * Using u201cFilter By Similarityu201d (-FBS), along with the best set of alignments, yaha will also output alignments that are highly similar to an alignment in the best set. * Finally, yaha can output all the alignments found for each query. The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome.

Install the latest version of yaha in Debian, Ubuntu and Kali from terminal. To install the yaha just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of yaha from the respository and install it in your computer/server.