Vcf_sample_filter

Vcf_sample_filter

vcf_sample_filter

helper scripts for Variant Call Format (VCF) parser

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Maintainer: Debian Med Packaging Team
Email: [email protected] .
Website: https://pypi.python.org/pypi/PyVCF
Section: python

Install vcf_sample_filter

  • Debian apt-get install pyvcf Click to copy
  • Ubuntu apt-get install pyvcf Click to copy
  • Kali Linux apt-get install pyvcf Click to copy
  • Raspbian apt-get install pyvcf Click to copy

pyvcf

helper scripts for Variant Call Format (VCF) parser

The Variant Call Format (VCF) specifies the format of a text file used in bioinformatics for storing gene sequence variations. The format has been developed with the advent of large-scale genotyping and DNA sequencing projects, such as the 1000 Genomes Project. The intent of this module is to mimic the ``csv`` module in the Python stdlib, as opposed to more flexible serialization formats like JSON or YAML. ``vcf`` will attempt to parse the content of each record based on the data types specified in the meta-information lines -- specifically the ##INFO and ##FORMAT lines. If these lines are missing or incomplete, it will check against the reserved types mentioned in the spec. Failing that, it will just return strings. This package provides helper scripts using python3-pyvcf.

Install the latest version of vcf_sample_filter in Debian, Ubuntu, Kali and Raspbian from terminal. To install the vcf_sample_filter just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of vcf_sample_filter from the respository and install it in your computer/server.