TargetedFileConverter

TargetedFileConverter

TargetedFileConverter

OpenMS tools

Maintainer: The Debichem Group



Section: science

Install TargetedFileConverter

  • Debian apt-get install topp Click to copy
  • Ubuntu apt-get install topp Click to copy
  • Kali Linux apt-get install topp Click to copy
  • Fedora dnf install openms-tools Click to copy
  • Raspbian apt-get install topp Click to copy

openms-tools

OpenMS tools

topp

set of programs implementing The OpenMS Proteomic Pipeline

TOPP (the OpenMS proteomic pipeline) is a pipeline for the analysis of HPLC/MS data. It consists of a set of numerous small applications that can be chained together to create analysis pipelines tailored for a specific problem. The applications make use of the libopenms library. Some examples of these applications are : - TOPPView: A viewer for mass spectrometry data. - TOPPAS: An assistant for GUI-driven TOPP workflow design. - DTAExtractor: Extracts spectra of an MS run file to several files in DTA format. - FileConverter: Converts between different MS file formats. - FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files. - SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks. - BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. - InternalCalibration: Applies an internal calibration. - PTModel: Trains a model for the prediction of proteotypic peptides from a training set. - RTPredict: Predicts retention times for peptides using a model trained by RTModel. - ExecutePipeline: Executes workflows created by TOPPAS.

To install the latest version of TargetedFileConverter in your favorite operating system just copy the TargetedFileConverter installation command from above and paste it into terminal. It will download and install the latest version of TargetedFileConverter 2024 package in your OS.