rsem synthesis reference transcripts

Rsem-synthesis-reference-transcripts Command

Rsem-synthesis-reference-transcripts Command

rsem-synthesis-reference-transcripts

RNA-Seq by Expectation-Maximization

Maintainer: Debian Med Packaging Team



Section: science

Install rsem-synthesis-reference-transcripts

  • Debian apt-get install rsem Click to copy
  • Ubuntu apt-get install rsem Click to copy
  • Kali Linux apt-get install rsem Click to copy
  • Raspbian apt-get install rsem Click to copy

rsem

RNA-Seq by Expectation-Maximization

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides an user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, It can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate. Genomic-coordinate files can be visualized by both UCSC Genome browser and Broad Instituteu2019s Integrative Genomics Viewer (IGV). Transcript-coordinate files can be visualized by IGV. RSEM also has its own scripts to generate transcript read depth plots in pdf format. The unique feature of RSEM is, the read depth plots can be stacked, with read depth contributed to unique reads shown in black and contributed to multi-reads shown in red. In addition, models learned from data can also be visualized. Last but not least, RSEM contains a simulator.

Installation of latest rsem-synthesis-reference-transcripts command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2023 latest package from the repository and install it in your computer/server.