Rgfa-simdebruijn

rgfa-simdebruijn

parse, edit and write GFA format graphs in Ruby

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: https://github.com/ggonnella/rgfa

Section: science

Install rgfa-simdebruijn

Debian apt-get install ruby-rgfa Click to copy
Ubuntu apt-get install ruby-rgfa Click to copy
Kali Linux apt-get install ruby-rgfa Click to copy
Raspbian apt-get install ruby-rgfa Click to copy

ruby-rgfa

parse, edit and write GFA format graphs in Ruby

The Graphical Fragment Assembly (GFA) format is a proposed file format to describe the product of a genome sequence assembly process. rgfa implements the proposed specifications for the GFA format described under https://github.com/pmelsted/GFA-spec/blob/master/GFA-spec.md as closely as possible. The library allows one to create an RGFA object from a file in the GFA format or from scratch, to enumerate the graph elements (segments, links, containments, paths and header lines), to traverse the graph (by traversing all links outgoing from or incoming to a segment), to search for elements (e.g. which links connect two segments) and to manipulate the graph (e.g. to eliminate a link or a segment or to duplicate a segment distributing the read counts evenly on the copies).

Installation of latest rgfa-simdebruijn command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2026 latest package from the repository and install it in your computer/server.