ProjectFeatures Installation On A Debian, Ubuntu, Kali And Raspbian

projectFeatures

genome assembly-to-assembly comparison

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: http://kmer.sourceforge.net

Section: science

Install projectFeatures

Debian apt-get install atac Click to copy
Ubuntu apt-get install atac Click to copy
Kali Linux apt-get install atac Click to copy
Raspbian apt-get install atac Click to copy

atac

genome assembly-to-assembly comparison

atac computes a one-to-one pairwise alignment of large DNA sequences. It first finds the unique k-mers in each sequence, chains them to larger blocks, and fills in spaces between blocks. It was written primarily to transfer annotations between different assemblies of the human genome. The output is a set of ungapped 'matches', and a set of gapped 'runs' formed from the matches. Each match or run associates one sequence with the other sequence. The association is 'unique', in that there is no other (sizeable) associations for either sequence. Thus, large repeats and duplications are not present in the output - they appear as unmapped regions. Though the output is always pairwise, atac can cache intermediate results to speed a comparisons of multiple sequences. This package is part of the Kmer suite.

Installation of latest projectFeatures command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2026 latest package from the repository and install it in your computer/server.