MaskAlignedReads Command

MaskAlignedReads Command

maskAlignedReads

map Pacific Biosciences reads to reference DNA sequences

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Install maskAlignedReads

  • Debian apt-get install pbalign Click to copy
  • Ubuntu apt-get install pbalign Click to copy
  • Raspbian apt-get install pbalign Click to copy

pbalign

map Pacific Biosciences reads to reference DNA sequences

pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. This package is part of the SMRTAnalysis suite.

Install the latest version of maskAlignedReads in Debian, Ubuntu and Raspbian from terminal. To install the maskAlignedReads just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of maskAlignedReads from the respository and install it in your computer/server.