Integrate_alignments.py

Integrate_alignments.py

integrate_alignments.py

pipeline for building loci from short-read DNA sequences

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Maintainer: Debian Med Packaging Team
Email: [email protected] .
Website: http://creskolab.uoregon.edu/stacks/
Section: science

Install integrate_alignments.py

  • Debian apt-get install stacks Click to copy
  • Ubuntu apt-get install stacks Click to copy
  • Kali Linux apt-get install stacks Click to copy
  • Raspbian apt-get install stacks Click to copy

stacks

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography. Note that this package installs Stacks such that all commands must be run as: $ stacks

Install the latest version of integrate_alignments.py in Debian, Ubuntu, Kali and Raspbian from terminal. To install the integrate_alignments.py just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of integrate_alignments.py from the respository and install it in your computer/server.