Install Map_back On A Debian, Ubuntu, Kali And Raspbian

Install Map_back On A Debian, Ubuntu, Kali And Raspbian

map_back

genomic sequence element (kmer) enrichment analysis

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Maintainer: Debian Med Packaging Team
Email: [email protected] .
Website: https://github.com/johnlees/seer
Section: science

Install map_back

  • Debian apt-get install seer Click to copy
  • Ubuntu apt-get install seer Click to copy
  • Kali Linux apt-get install seer Click to copy
  • Raspbian apt-get install seer Click to copy

seer

genomic sequence element (kmer) enrichment analysis

Bacterial genomes vary extensively in terms of both gene content and gene sequence - this plasticity hampers the use of traditional SNP-based methods for identifying all genetic associations with phenotypic variation. SEER provides a computationally scalable and widely applicable statistical method for the identification of sequence elements that are significantly enriched in a phenotype of interest. SEER is applicable to even tens of thousands of genomes by counting variable- length k-mers using a distributed string-mining algorithm. Robust options are provided for association analysis that also correct for the clonal population structure of bacteria. Using large collections of genomes of the major human pathogen Streptococcus pneumoniae, SEER identifies relevant previously characterised resistance determinants for several antibiotics.

Install the latest version of map_back in Debian, Ubuntu, Kali and Raspbian from terminal. To install the map_back just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of map_back from the respository and install it in your computer/server.