Install Iterative_cdhit On A Debian, Ubuntu, Kali And Raspbian

iterative_cdhit

high speed stand alone pan genome pipeline

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: https://sanger-pathogens.github.io/Roary/

Section: science

Install iterative_cdhit

Debian apt-get install roary Click to copy
Ubuntu apt-get install roary Click to copy
Kali Linux apt-get install roary Click to copy
Raspbian apt-get install roary Click to copy

roary

high speed stand alone pan genome pipeline

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.

To install the latest version of iterative_cdhit in your favorite operating system just copy the iterative_cdhit installation command from above and paste it into terminal. It will download and install the latest version of iterative_cdhit 2026 package in your OS.