Install Glam2format On A Debian, Ubuntu, Kali And Raspbian

Install Glam2format On A Debian, Ubuntu, Kali And Raspbian

glam2format

gapped protein motifs from unaligned sequences

Maintainer: Debian Med Packaging Team



Section: science

Install glam2format

  • Debian apt-get install glam2 Click to copy
  • Ubuntu apt-get install glam2 Click to copy
  • Kali Linux apt-get install glam2 Click to copy
  • Raspbian apt-get install glam2 Click to copy

glam2

gapped protein motifs from unaligned sequences

GLAM2 is a software package for finding motifs in sequences, typically amino-acid or nucleotide sequences. A motif is a re-occurring sequence pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs. This package includes programs for discovering motifs shared by a set of sequences and finding matches to these motifs in a sequence database, as well as utilities for converting glam2 motifs to standard alignment formats, masking glam2 motifs out of sequences so that weaker motifs can be found, and removing highly similar members of a set of sequences. The package includes these programs: glam2: discovering motifs shared by a set of sequences; glam2scan: finding matches, in a sequence database, to a motif discovered by glam2; glam2format: converting glam2 motifs to standard alignment formats; glam2mask: masking glam2 motifs out of sequences, so that weaker motifs can be found; glam2-purge: removing highly similar members of a set of sequences. In this binary package, the fast Fourier algorithm (FFT) was enabled for the glam2 program.

Installation of latest glam2format command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2024 latest package from the repository and install it in your computer/server.