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Install Art_SOLiD On A Debian, Ubuntu, Kali And Raspbian

Install Art_SOLiD On A Debian, Ubuntu, Kali And Raspbian

art_SOLiD

simulation tools to generate synthetic next-generation sequencing reads

Maintainer: Debian Med Packaging Team



Section: science

Install art_SOLiD

  • Debian apt-get install art-nextgen-simulation-tools Click to copy
  • Ubuntu apt-get install art-nextgen-simulation-tools Click to copy
  • Kali Linux apt-get install art-nextgen-simulation-tools Click to copy
  • Raspbian apt-get install art-nextgen-simulation-tools Click to copy

art-nextgen-simulation-tools

simulation tools to generate synthetic next-generation sequencing reads

ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods.

Installation of latest art_SOLiD command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2022 latest package from the repository and install it in your computer/server.