How To Install Hisat2-build-s In Debian, Ubuntu And Kali?

hisat2-build-s

graph-based alignment of short nucleotide reads to many genomes

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: https://ccb.jhu.edu/software/hisat2/index.shtml

Section: science

Install hisat2-build-s

Debian apt-get install hisat2 Click to copy
Ubuntu apt-get install hisat2 Click to copy
Kali Linux apt-get install hisat2 Click to copy

hisat2

graph-based alignment of short nucleotide reads to many genomes

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes (as well as against a single reference genome). Based on an extension of BWT for graphs a graph FM index (GFM) was designed and implementd. In addition to using one global GFM index that represents a population of human genomes, HISAT2 uses a large set of small GFM indexes that collectively cover the whole genome (each index representing a genomic region of 56 Kbp, with 55,000 indexes needed to cover the human population). These small indexes (called local indexes), combined with several alignment strategies, enable rapid and accurate alignment of sequencing reads. This new indexing scheme is called a Hierarchical Graph FM index (HGFM).

Install the latest version of hisat2-build-s in Debian, Ubuntu and Kali from terminal. To install the hisat2-build-s just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of hisat2-build-s from the respository and install it in your computer/server.