How To Install ChromHMM?
ChromHMM
Chromatin state discovery and characterization
Install ChromHMM
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Debian
apt-get install chromhmmClick to copy -
Ubuntu
apt-get install chromhmmClick to copy -
Kali Linux
apt-get install chromhmmClick to copy
chromhmm
Chromatin state discovery and characterizationChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser.