Gmap.avx2 Installation On A Ubuntu And Kali

Gmap.avx2 Installation On A Ubuntu And Kali

gmap.avx2

spliced and SNP-tolerant alignment for mRNA and short reads

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Install gmap.avx2

  • Ubuntu apt-get install gmap Click to copy
  • Kali Linux apt-get install gmap Click to copy

gmap

spliced and SNP-tolerant alignment for mRNA and short reads

This package contains the programs GMAP and GSNAP as well as utilities to manage genome databases in GMAP/GSNAP format. GMAP (Genomic Mapping and Alignment Program) is a tool for aligning EST, mRNA and cDNA sequences. GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for aligning single-end and paired-end transcriptome reads. Both tools can use a database of * known splice sites and identify novel splice sites. * known single-nucleotide polymorphisms (SNPs). GSNAP can align bisulfite-treated DNA.

Install the latest version of gmap.avx2 in Ubuntu and Kali from terminal. To install the gmap.avx2 just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of gmap.avx2 from the respository and install it in your computer/server.