gc coverage bias

Gc_coverage_bias Command

Gc_coverage_bias Command

gc_coverage_bias

Profile based Illumina pair-end Reads Simulator

Maintainer: Debian Med Packaging Team



Section: science

Install gc_coverage_bias

  • Debian apt-get install pirs Click to copy
  • Ubuntu apt-get install pirs Click to copy
  • Kali Linux apt-get install pirs Click to copy
  • Raspbian apt-get install pirs Click to copy

pirs

Profile based Illumina pair-end Reads Simulator

The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias. The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated. The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided. To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.

Installation of latest gc_coverage_bias command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2023 latest package from the repository and install it in your computer/server.