Fastx_quality_stats Command

Fastx_quality_stats Command

fastx_quality_stats

FASTQ/A short nucleotide reads pre-processing tools

Maintainer: Debian Med Packaging Team



Section: science

Install fastx_quality_stats

  • Debian apt-get install fastx-toolkit Click to copy
  • Ubuntu apt-get install fastx-toolkit Click to copy
  • Kali Linux apt-get install fastx-toolkit Click to copy
  • Fedora dnf install fastx_toolkit Click to copy
  • Raspbian apt-get install fastx-toolkit Click to copy

fastx-toolkit

FASTQ/A short nucleotide reads pre-processing tools

The FASTX-Toolkit is a collection of command line tools for preprocessing short nucleotide reads in FASTA and FASTQ formats, usually produced by Next-Generation sequencing machines. The main processing of such FASTA/FASTQ files is mapping (aligning) the sequences to reference genomes or other databases using specialized programs like BWA, Bowtie and many others. However, it is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genomeu2014manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks.

fastx_toolkit

files
Installation of latest fastx_quality_stats command is available for Debian, Ubuntu, Kali, Fedora and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2023 latest package from the repository and install it in your computer/server.