EcoPCR Installation On A Debian, Ubuntu, Kali And Raspbian

ecoPCR

estimate PCR barcode primers quality

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: https://git.metabarcoding.org/obitools/ecopcr/wikis/home

Section: science

Install ecoPCR

Debian apt-get install ecopcr Click to copy
Ubuntu apt-get install ecopcr Click to copy
Kali Linux apt-get install ecopcr Click to copy
Raspbian apt-get install ecopcr Click to copy

ecopcr

estimate PCR barcode primers quality

DNA barcoding is a tool for characterizing the species origin using a short sequence from a standard position and agreed upon position in the genome. To be used as a DNA barcode, a genome locus should vary among individuals of the same species only to a minor degree and it should vary among species very quickly. From a practical point of view, a barcode locus should be ufb02anked by two conserved regions to design PCR primers. Several manually discovered barcode loci like COI, rbcL, 18S, 16S and 23S rDNA, or trnH-ps are routinely used today, but no objective function has been described to measure their quality in terms of universality (barcode coverage, Bc ) or in terms of taxonomical discrimination capacity (barcode speciufb01city, Bs ). ecoPCR is an electronic PCR software developed by LECA and Helix-Project. It helps to estimate Barcode primers quality. In conjunction with OBITools you can postprocess ecoPCR output to compute barcode coverage and barcode speciufb01city. New barcode primers can be developed using the ecoPrimers software

Installation of latest ecoPCR command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2026 latest package from the repository and install it in your computer/server.