Create_pan_genome Command

Create_pan_genome Command

create_pan_genome

high speed stand alone pan genome pipeline

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Maintainer: Debian Med Packaging Team
Email: [email protected] .
Website: https://sanger-pathogens.github.io/Roary/
Section: science

Install create_pan_genome

  • Debian apt-get install roary Click to copy
  • Ubuntu apt-get install roary Click to copy
  • Kali Linux apt-get install roary Click to copy
  • Raspbian apt-get install roary Click to copy

roary

high speed stand alone pan genome pipeline

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (as produced, for instance, by Prokka) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, something which is computationally infeasible with existing methods, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. To perform this analysis using existing methods would take weeks and hundreds of GB of RAM. Roary is not intended for meta-genomics or for comparing extremely diverse sets of genomes.

Installation of latest create_pan_genome command is available for Debian, Ubuntu, Kali and Raspbian. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2026 latest package from the repository and install it in your computer/server.