Centrifuge-download Command

Centrifuge-download Command

centrifuge-download

rapid and memory-efficient system for classification of DNA sequences

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Maintainer: Debian Med Packaging Team
Email: [email protected] .
Website: https://ccb.jhu.edu/software/centrifuge/
Section: science

Install centrifuge-download

  • Debian apt-get install centrifuge Click to copy
  • Ubuntu apt-get install centrifuge Click to copy
  • Kali Linux apt-get install centrifuge Click to copy

centrifuge

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Installation of latest centrifuge-download command is available for Debian, Ubuntu and Kali. You can copy the command for your OS from above and paste it into your terminal. Once you run the command it will download the 2026 latest package from the repository and install it in your computer/server.