Bam2fastx Installation On A Debian, Ubuntu, Kali And Raspbian

bam2fastx

fast splice junction mapper for RNA-Seq reads

Maintainer: Debian Med Packaging Team

Email: [email protected] .

Website: http://ccb.jhu.edu/software/tophat

Section: science

Install bam2fastx

Debian apt-get install tophat Click to copy
Ubuntu apt-get install tophat Click to copy
Kali Linux apt-get install tophat Click to copy
Raspbian apt-get install tophat Click to copy

tophat

fast splice junction mapper for RNA-Seq reads

TopHat aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. TopHat is a collaborative effort between the University of Maryland Center for Bioinformatics and Computational Biology and the University of California, Berkeley Departments of Mathematics and Molecular and Cell Biology.

Install the latest version of bam2fastx in Debian, Ubuntu, Kali and Raspbian from terminal. To install the bam2fastx just copy the above command for your OS and run into terminal. After you run the command it will grab the latest version of bam2fastx from the respository and install it in your computer/server.